ProtStructQA: leaderboard

Protein-language systems are often evaluated by whether they generate plausible biological text, but a structural question has a sharper semantics: it denotes a measurement in a 3D coordinate system. We introduce ProtStructQA, an executable benchmark for protein structural question answering in which each natural-language question is generated from a hidden typed domain-specific language (DSL) pro

Metric: Standard (self-reported). Source: benchmarklist.com. Saturation forecast: Estimated already saturated. 4 models tracked.

Top models

#ModelScoreOverall rank
1Qwen 3 4B70.33#829
2Qwen 3 8B68.05#674
3Qwen 3 1.7B28.69#1196
4Qwen 3 0.6B21.15#1459

No result here: #3 Claude Opus 5.5, #6 GPT-6 Astra, #7 GPT-6.1 Sol.

Interactive version: theaggregate.ai/benchmark?slug=protstructqa · How It Works · Data refreshed daily, snapshot 2026-10-20.