Nucleotide Transformer - Regulatory Elements: leaderboard
Nucleotide Transformer regulatory-elements task group, reporting mean MCC across promoter and enhancer prediction tasks.
Metric: Mean MCC. Source: huggingface.co. 16 models tracked.
Top models
| # | Model | Score | Overall rank |
|---|---|---|---|
| 1 | NT-Multispecies (2.5B) | 0.7 | |
| 2 | Enformer | 0.7 | |
| 3 | NT-Multispecies-v2 (250M) | 0.69 | |
| 4 | NT-Multispecies-v2 (500M) | 0.69 | |
| 5 | NT-Multispecies-v2 (100M) | 0.66 | |
| 6 | DNABERT-2 | 0.66 | |
| 7 | NT-1000G (500M) | 0.66 | |
| 8 | NT-HumanRef (500M) | 0.66 | |
| 9 | NT-1000G (2.5B) | 0.65 | |
| 10 | NT-Multispecies-v2 (50M) | 0.64 |
Interactive version: theaggregate.ai/benchmark?slug=nucleotide-transformer-regulatory-elements · How It Works · Data refreshed daily, snapshot 2026-10-20.