Nucleotide Transformer - Histone Marks: leaderboard

Nucleotide Transformer histone-mark task group, reporting mean MCC across chromatin mark prediction tasks.

Metric: Mean MCC. Source: huggingface.co. 15 models tracked.

Top models

#ModelScoreOverall rank
1NT-Multispecies-v2 (250M)0.56
2NT-Multispecies-v2 (500M)0.56
3Enformer0.56
4DNABERT-20.56
5NT-1000G (2.5B)0.55
6NT-Multispecies-v2 (100M)0.55
7NT-Multispecies (2.5B)0.55
8NT-Multispecies-v2 (50M)0.55
9NT-HumanRef (500M)0.53
10NT-1000G (500M)0.53

Interactive version: theaggregate.ai/benchmark?slug=nucleotide-transformer-histone-marks · How It Works · Data refreshed daily, snapshot 2026-10-20.