BioMedHop (Direct Prompting) - Entity Pair Matching: leaderboard
The Entity Pair Matching family of BioMedHop (Tan et al., 2026): name the biomedical entity, such as a gene, compound or symptom, that two anchor entities share in the Monarch knowledge graph. The score is the mean of multiple-choice and alias-normalised open-answer accuracy in percent; higher is better. Direct prompting without retrieved evidence.
Metric: Accuracy (%; mean of multiple-choice accuracy and alias-normalised open-answer accuracy on Entity Pair Matching (the shared biomedical neighbour of two anchor entities); stratified evaluation subsets of the 10,045 instances; direct input-output prompting with no retrieved evidence (the paper's IO baseline), temperature 0, at most 1,024 output tokens). Source: arxiv.org. Saturation forecast: Around 2030. 9 models tracked.
Top models
| # | Model | Score | Overall rank |
|---|---|---|---|
| 1 | Gemini 2.5 Pro | 13.3 | #262 |
| 2 | GPT-4 Turbo | 12.7 | #1002 |
| 3 | Claude 3.7 Sonnet | 12.4 | #455 |
| 4 | Qwen 3 Next 80B A3B Instruct | 10.8 | #763 |
| 5 | MiMo-V2.5-Pro | 9.4 | #274 |
| 6 | Claude 3.5 Haiku | 8.9 | #1563 |
| 7 | GPT-4o Mini | 7.8 | #1627 |
| 8 | Qwen 3 4B | 5.9 | #2297 |
No result here: #1 Claude Fable 5.2, #2 Gemini 4 Carbon, #5 Claude Opus 5.5.
Interactive version: theaggregate.ai/benchmark?slug=biomedhop-direct-prompting-entity-pair-matching · How It Works · Data refreshed daily, snapshot 2026-11-12.